VERSION 1.0.2 Wednesday Oct 24, 2007 NOTE - In order for this version of the code to run, GNU Scinetific Libraries (GSL) MUST be installed on the computer. BUG FIXES * Amino acid count correction * Sequence ID bug fixed * MLE estimation of alpha beta * Initialization of the model (MLE or MOM) IMPROVEMENTS * Use of GSL routines for the following modules - Maximum Likelihood Estimation of the parameters of the Eta distribution (alpha and beta) - Estimation of the parameters of the posterior distribution - Estimation of the half-percentiles of the posterior distribution * Optimizing the generation of sequences * Ability to output the different configurations generated for each sequence into a file * Ability to read different configurations of a sequence from a file