ATLSS PanTrack Telemetry Visualization Tool v.1.0.1




I. Software Description


ATLSS PanTrack is a tool designed to display and analyze spatial movement data over georeferenced landscape maps. It has been customized for the display of radio-telemetry observations collected for the
Florida panther endangered species recovery project. PanTrack was originally developed to help define panther behavior rules for the spatially explicit, individual-based ATLSS Deer/Panther model (Comiskey et al. 1997) . The effectiveness of individual-based models depends upon the availability of detailed observations about individuals on the landscape, and on the ability to find patterns in these observations that provide insight into key animal behaviors (DeAngelis 1998).

South Florida is home to the last remaining population of endangered Florida panthers (Puma concolor coryi), estimated at about 60 individuals (McBride 2000). Panther survival is threatened by habitat loss and degradation, inbreeding, insufficient numbers of large prey, and disease. Because the few remaining panthers have been so intensively studied, a fairly detailed database is available for individuals in the population. Monitoring of Florida panthers by radio telemetry began with the radio-collaring of two individuals in 1981, and has expanded to include forty-one panthers, a majority of the population. Over 50,000 telemetry locations are available over the observation period.

The PanTrack tool can be adapted to display and analyze any location coordinates over background map layers. In addition to its application to panther monitoring, it has been used to display annual field observation data for Cape Sable Seaside Sparrows and telemetry observations for American Alligators . It could also be used to display movements of simulated animals generated by spatially explicit, individual-based models.



II. Platform and System Requirements


PanTrack Version 1.0.1 currently operates only on Sun workstations or on PC's with a LINUX operating system installed. Installation of
PV-WAVE Version 7.00 (Visual Data Analysis Software by Visual Numerics) is required. PanTrack data and program installation require 14MB of disk space.



III. PanTrack Features


The run-time PanTrack screen consists of a PV-WAVE command window, a Landscape Map Window, and a menu board user-interface., all of which remain through the session. Zoom and Animation windows may be created and dismissed during the session. PanTrack first reads in needed data files, which may take several minutes, depending on the speed of the machine on which it is installed.

After data has been loaded, the Landscape Map Window appears. This window remains throughout the PanTrack session, displaying a landscape map for South Florida. Telemetry observations will be displayed in this window.

The menu board then appears at the top of the monitor screen, displaying the user control panel.

Groups of related user option choices are organized into columns on the menu board. A help file describing each option is available for each column, accessed by clicking a HELP button at top of column.

Selections may be made in any order. For unmodified options, default selections are used. After all subsetting selections have been made, click DISPLAY button (in PROGRAM CONTROLS column) to display observations in the landscape map window. (Expanded description of options coming soon)



IV. Files Supplied with PanTrack


Directory Structure

Parent directory: track
Subdirectories:
demo: program files; move to this directory to run PanTrack
data: data files
colormaps: color files for PV-WAVE displays

Program Files (directory track/demo)

PV-WAVE executable file:
track.cpr

Configuration files (may be modified by users):

init.config
reset.config
paths.config
menu.config
habnames.config
help.config
defs.config

Variable listing files:

com.opts
com.menu
com.map
com.leg
com.hab
com.defs
com.grp

Data Files (directory track/data).

Data files are appended with metadata information describing the file format and content.

Telemetry observations (in UTMs):

utmobs.wave

Home Range polygon outlines (in UTMs):
hrpolygons.dat

Vital statics information about each animal: vitalstats.dat
Help files, displayed in help windows in response to user requests:
help1.txt - subgroup help
help2.txt - time step help
help3.txt - time period help
help4.txt - display options help
help5.txt - map options help
help6.txt - program control help
help.txt - tool help

Overlay vectors for roads, canals, public areas:
roads1.utms - primary road vectors
roads2.utms - secondary road vector overlay
canals.utms - canal vector overlay
puball.utms - public areas vector overlay
basnvect.utms - drainage basin vector overlay

Underlying habitat type map
FGAP v. 6.6 , 100-m x 100-m resolution (USGS):
fgap6_100m.bsq

Colormap Files (directory track/colormaps)

Red/Green/Blue designations for PV-WAVE colormaps. Separate colormap files are required for each background map choice (options not currently valid). PanTrack identifies and loads appropriate color files automatically.



V. Adding New Telemetry Data


As panther monitoring is an on-going effort, new telemetry observations will periodically become available to add to to the observation data set. Vital statistics information about panthers will also change, as individuals are added to the population through birth or are removed through death. Users will have several choices about how to incorporate new data. They may request an updated installation which includes modifications for new data; or they may choose to add data themselves, following simple instructions for editing and formatting data files provided with the installation.



Acknowledgements


We acknowledge the Biological Resources Division of the U.S. Geological Survey for project funding, under Cooperative Agreement #1445-CA09-95-0094, and in particular Ronnie Best for recognizing the value of such a tool. We thank the Florida Fish and Wildlife Conservation Commission (FWC), including panther leaders Darrell Land and David Shindle, and National Park Service (NPS) representatives at Everglades National Park (ENP) and Big Cypress National Preserve (BCNP) for access to telemetry data sets collected over the period 1981 - 2000. We especially thank Sonny Bass of ENP, Deborah Jansen of BCNP, and Roy McBride, consultant to FWC, dedicated workers in the panther recovery project, for their advice and contributions at all stages of this project.


References

DeAngelis, D.L., L.J. Gross, M.A. Huston, W.F. Wolff, D.M. Fleming, E.J. Comiskey, and S.M. Sylvester (1998). Landscape Modeling for Everglades Ecosystem Restoration. Ecosystems 1:64-75.

Comiskey, E. J., L. J. Gross, D. M. Fleming, M. A. Huston, O. L. Bass, H.-K. Luh and Y. Wu. (1997) A spatially-explicit individual-based simulation model for Florida panther and white-tailed deer in the Everglades and Big Cypress landscapes. Proceedings of the Florida Panther Conference, Ft. Myers Fla., November 1994, Dennis Jordan, ed., U.S. Fish and Wildlife Service, pp. 494-503.

McBride, R. (2000) Current Panther Distribution and Habitat Use: A Review of Field Notes Fall 1999 - Winter 2000. Report to Florida Panther SubTeam of MERIT, US Fish and Wildlife Service, South Florida Ecosystem Office, Vero Beach, Florida. May 2, 2000.

U.S. Geological Survey, Biological Resources Division [USGS-BRD], Florida Cooperative Fish and Wildlife Research Unit, Univ. of Florida. http://www.wec.ufl.edu/coop/gap. Based on United States National Vegetation Classification System (NVCS) vegetation map of the state of Florida (Anderson et al. 1998, Grossman et al. 1998) http://www.consci.tnc.org/library/pubs/class/.



VI. Contact Information


PanTrack is available to all groups and individuals active in panther recovery who have approved telemetry data access.

All files needed will be supplied on CD-ROM. If you have questions about PanTrack or would like to request a CD-ROM, please contact:

Jane Comiskey
Institute for Environmental Modeling
Dept. of Ecology and Evolutionary Biology
Dabney Hall, Rm. 569
University of Tennessee
Knoxville, TN 37996-1610
ecomiske@tiem.utk.edu

Phone: (865) 974-0224
Fax: (865) 974-3067



Copyright © 2000 Jane Comiskey/ATLSS
Last Updated : May 26, 2000